Plugins

GEO and bulk transcriptomics workbench backed by a local Python and R engine: search and download GEO series, import your own counts or TPM matrix, then run QC, filtering, normalisation, batch correction, PCA, differential expression, GO/KEGG/GSEA enrichment, immune infiltration, survival and prognosis, signature mapping onto single-cell data, and circRNA, miRNA, lncRNA, fusion and alternative-splicing modules.