Plugins

Biomimetic memory system for DeepSeek Harness: a single SQLite store (node:sqlite, WAL) whose Markdown tree is kept as a read-only mirror; memory tools, frozen-snapshot injection at session start, graded approval gating, on-demand extraction of the current session, near-duplicate merging, an archive and supersede lifecycle, memory metabolism (dream), memory pins, semantic recall over local embeddings, and the /memory command.

Whole-report verification for scientific reports: per-claim checks against Crossref, PubMed (retraction scan), ClinicalTrials.gov, UniProtKB, GEO/SRA and PatentsView, URL accessibility and title agreement, claim-vs-source meaning at temperature 0, and a durable restartable audit ledger with an annotated report.

生物信息学「许愿式分析」插件：BioPython 全功能覆盖（任意代码执行器 bio_python + 14 个领域 skill）+ 高频语义化工具 + 零依赖自举 Python 环境（uv + venv + biopython 自动下载到插件私有目录）。用户下载安装即可许愿式分析。

蛋白质结构预测与设计插件：序列设计（ProteinMPNN/SolubleMPNN/LigandMPNN）、结构预测（ESMFold）、复合物界面筛选、序列理化打分与多样性聚类——零手动自举（本地 CPU/GPU 自适应），供 dsh-bio-genie 消费 | Protein structure prediction & design toolkit for dsh (sequence design, folding, interface screening)

基因组尺度代谢模型（GEM）构建插件：输入细菌全基因组（蛋白FASTA，支持多质粒/多染色体），自动构建+验证+补洞+出报告（SBML + 模型卡），供 dsh-bio-genie 消费工具加载使用 | Genome-scale metabolic model builder for dsh

Bioinformatics workflow catalog, WDL bundle store, and declarative preflight for DeepSeek Harness.